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Whole Wheat Chocolate Chip Cookies with Oats

4.84
/5
25 mins
89 Comments
Jump to Recipe Video
By: Rachel GurkPosted: 08/26/2022Updated: 01/09/2023

This post may contain affiliate links. Please read my disclosure policy.

Cookies, text overlay reads "whole wheat chocolate chip cookies."
Cookies, text overlay reads "whole wheat chocolate chip cookies - so good."
Cookies, text overlay reads "whole wheat chocolate chip cookies."
Cookies, text overlay reads "whole wheat chocolate chip cookies."
Whole Wheat Chocolate Chip Cookies - a no-fail recipe | RachelCooks.com

A healthier spin on the original, whole wheat chocolate chip cookies are everything you want in a cookie: a little chewy, a little crispy and a lot decadent.

Recipe Overview

Why you’ll love it: For a chocolate chip cookie, these are pretty healthy with whole wheat flour and oats, and they taste great!

How long it takes: 15 minutes to make the dough, 10 minutes to bake each batch
Equipment you’ll need: electric mixer (optional), large bowl, cookie sheets
Servings: makes 5 dozen, depending on size

Layers of whole wheat chocolate chip cookies.
Table of Contents
open
  • 1 Recipe Overview
  • 2 About This Recipe
  • 3 What You’ll Need
  • 4 How To Make This Recipe
  • 5 FAQs
  • 6 Make It Your Own
  • 7 Make-Ahead Ideas
  • 8 Storage Tips
  • 9 Leftover Love
  • 10 More Cookie Recipes
  • 11 Get the Recipe: Whole Wheat Chocolate Chip Cookies with Oats

I’m always looking for guinea pigs to test my recipes on and my husband is a willing volunteer. I’m thankful for that; my kids aren’t quite as enthusiastic unless the recipe happens to contain sugar and chocolate. Ben is usually game for almost anything but does tend to like more classic recipes that don’t deviate too much from what he’s used to.

He loves the original crispy chocolate chip cookies and my chewy chocolate chocolate chip cookies (they’re my favorite!) but he is always open to trying something that is a little better for him. Making his favorites just a bit healthier usually gets his attention.

Don’t get me wrong, these cookies are still a treat!  They are chocolate chip cookies after all.  I try to focus on small changes, like making the cookies with whole wheat flour and oats, changes that can add up and make a difference in our health. Deprivation is not the answer, at least not for me.

I like to keep a big batch of this dough in the freezer. Ben will bake a couple in the toaster oven when he’s craving a chocolate chip cookie. Sometimes I even bake a small batch for him. Or for myself. Or sometimes we just eat the frozen dough.

About This Recipe

This is a basic chocolate chip cookie recipe but instead of regular all-purpose flour, you’ll be using whole wheat flour. The nutrition is amped up even more with a cup of oats.

Why make cookies with whole wheat flour and oats? Both are healthy whole grains that add fiber, protein, vitamins, and minerals to your diet. I often use at least half whole wheat flour to make cookies, if not all.

This dough does not need to be chilled before baking. If you want to chill it and bake the cookies later, that’s totally fine, too. We tested the cookies both ways and either way works.

Cookies on a white background.

I’ll get you started on the recipe here and give you some nice tips. As always, keep reading or hit the recipe button for the printable recipe near the end of the post. It has complete instructions, measurements, and nutrition information.

What You’ll Need

  • Whole Wheat Flour: Because whole wheat flour contains all the parts of the wheat kernel (bran, germ, and endosperm), it can spoil more quickly. It should be stored in the refrigerator or freezer. Wondering what you’ll do with the rest of the whole wheat flour? Try making whole wheat pancake mix or whole wheat banana bread. You’ll find lots more whole wheat recipes on my site.
  • Oats: Choose either quick oats or old-fashioned oats. I usually use quick oats for these cookies because they aren’t quite as noticeable as whole oats. Don’t use instant oatmeal or steel cut oats (Irish oats).
  • Chocolate Chips: You’ll need one 12 ounce bag of chips. I like to buy semisweet chocolate chips but milk chocolate chips are fine if you prefer them.
  • Butter: Unsalted butter is the best choice for baking. Take it out a couple of hours ahead of time so it has time to soften. Rock hard chilled butter will be impossible to blend in. Butter spreads are not a good choice for making cookies; they contain too much oil.
  • Brown Sugar and Granulated Sugar: These cookies call for a combination (50/50) of both kinds of sugar.
  • Eggs: A couple of eggs add extra flavor and nutrition.
  • Baking Soda, Salt: Common cookie ingredients that add leavening and seasoning.
  • Vanilla Extract: This baker’s friend enhances the flavor of the cookies with warm vanilla undertones.
Ingredients needed for recipe, including whole wheat flour and chocolate chips.

How To Make This Recipe

If you plan on baking the cookies right away, turn your oven on to preheat. Line a couple of cookie sheets with parchment paper (for easy clean-up).

You’ll need a large mixing bowl. Begin by creaming together the butter, sugar, brown sugar, and vanilla. You can use a hand mixer or a stand mixer, or you can do it with good ol’ arm power. The mixture should be creamy and well-blended.

Butter and sugar creamed together.

Blend in the eggs until they are completely incorporated.

Eggs blended into milk and sugar.

Measure out the flour by spooning it into a measuring cup and leveling it off with a straight edge, like a table knife. Avoid scooping the flour out of the container with the measuring cup or shaking it down to level it. This will result in too much flour being added to your cookies and they’ll be tough.

Add the flour, baking powder and salt to the bowl.

Dry ingredients being mixed.

Mix those three ingredients lightly right on top of the butter mixture until they are blended; then stir them in. Keep stirring the dough until there’s no dry flour but don’t overstir.

Dry ingredients being blended in.

Once the flour is blended into the butter/sugar mixture, fold in the the oats.

Oats added to cookie dough.

Next, fold in the the chocolate chips until they are evenly distributed.

Chocolate chips added.

Use a tablespoon or scoop to portion out the dough onto the cookie sheets. Leave a couple of inches between the cookies because they will spread a little.

Unbaked cookies on baking sheet.

Bake the cookies in the preheated oven for about ten minutes or until they are golden brown. They’ll be slightly soft in the middle. The longer you bake them, the crisper they’ll be.

Baked cookies on sheet pan with chocolate chips sprinkled around.

Cool the cookies a few minutes on the cookie sheet until they firm up a bit and then transfer them to a wire cooling rack to cool completely.

FAQs

Does whole wheat flour make cookies taste different?

You’ll maybe notice that your cookies are a bit denser and have more of a grainy, almost nutty flavor. Quite possibly, you won’t notice any difference at all; it’s very subtle. My family is used to whole wheat and it’s really not a big deal. So I say, why not slip in a bit of extra nutrition when you can? Even in a cookie!

Does whole wheat flour bake the same as all-purpose?

Usually, you can substitute whole wheat flour 1:1 for all-purpose flour in cookie recipes and the cookies will bake the same and taste very similar.
This doesn’t hold true for all baking though. Whole wheat pie crusts may be tougher; whole wheat breads are denser and heavier; and whole wheat cakes will be heavy and not rise as much.
Try these recipes that use whole wheat flour: whole wheat banana muffins with streusel; whole wheat zucchini bread; whole wheat cornbread; or whole wheat biscuits.

Can you substitute all-purpose flour for whole wheat flour?

If your recipe calls for whole wheat flour, it’s usually okay to substitute all-purpose flour. That holds true for this chocolate chip cookie recipe and most other recipes. The cookies won’t be exactly the same but will taste great either way.

Make It Your Own

  • Not a fan of whole wheat flour? Feel free to use all-purpose flour instead!
  • There are some good gluten-free flours that can be substituted 1:1 for wheat flour. Note: I haven’t tested this recipe with gluten-free flour.
  • Feeling nutty? Substitute a cup of chopped nuts for the oats.
  • There are lots of baking chips to choose from: peanut butter, toffee, milk chocolate, butterscotch, etc. Mix things up a little by using a different flavor.
  • Rather have M&Ms? Try my popular M&M cookies!
  • Prefer iced cookies? Try my recipe for iced oatmeal cookies.
Two cookies stacked, one with a bite removed.

Make-Ahead Ideas

The cookie dough can be made ahead and either refrigerated or frozen. The dough will keep in the refrigerator for two to four days, or in the freezer for up to two months.

I like to freeze the dough in convenient cookie sized amounts. Freeze individual dough balls for an hour or so on a tray until they firm up; then place them in a freezer safe container. You can take out as many as you like whenever you’re craving fresh warm cookies.

Storage Tips

Baked cookies, once they are thoroughly cooled, can be stored in an airtight container on the counter for up to a week. They freeze well too, and will keep for a few months.

Leftover Love

Is there such a thing as leftover cookies? I don’t think so! If you seem to have an excess of cookies and you don’t want to freeze them, make a chocolate chip cookie milkshake or simply crumble a cookie on a bowl of ice cream for a special treat.

More Cookie Recipes

Coconut Oatmeal Cookies – perfectly crispy!

Easy Trail Mix Cookies

Oatmeal Raisin Cookies (whole wheat!)

Snickerdoodle Recipe

Browse All

Did you make this? Be sure to leave a review below and tag me @rachelcooksblog on Facebook, Instagram, or Pinterest!

Two whole wheat chocolate chip cookies, one with a bite out of it.
Recipe

Get the Recipe: Whole Wheat Chocolate Chip Cookies with Oats

4.84 from 12 votes
Prep Time: 15 mins
Cook Time: 10 mins
Total Time: 25 mins
60 cookies
Print Rate Recipe
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A healthier spin on the original, whole wheat chocolate chip cookies are everything you want in a cookie: a little chewy, a little crispy and a lot decadent.

Ingredients

  • 2 ¼ cups whole wheat flour (see note)
  • 1 teaspoon baking soda
  • ¾ teaspoon salt
  • 1 cup (2 sticks) unsalted butter, softened
  • ¾ cup granulated sugar
  • ¾ cup packed brown sugar
  • 1 teaspoon pure vanilla extract
  • 2 eggs
  • 1 cup quick cooking oats
  • 2 cups semisweet chocolate chips (12 oz. bag)

Instructions

  • Preheat oven to 365°F. Line cookie sheets with parchment paper.
  • In the bowl of a mixer (or you can mix it by hand), cream together butter, granulated sugar, brown sugar, and vanilla extract. Once creamy and fluffy, beat in eggs.
  • Add flour, baking soda and salt to bowl. Stir just enough to mix the dry ingredients, then mix into the butter mixture until just combined. Stir in oats, then chocolate chips.
  • Scoop onto cookie sheet (1 ½ tablespoons each), leaving some space between each cookie.
  • Bake for 10-11 minutes or until golden brown but still slightly soft in the middle. Cool on cookie sheet for five minutes, then transfer to a wire rack to cool completely.

Notes

  • If you prefer, substitute all-purpose flour, or use a combination of whole wheat flour and all-purpose flour.
  • A cup of chopped nuts can be substituted for the oats.
  • Dough can be refrigerated for two to four days or frozen up to two months to bake later. See Make-Ahead Ideas (above) for tips on freezing dough.

Nutrition Information

Serving: 1cookie, Calories: 104kcal, Carbohydrates: 13g, Protein: 1g, Fat: 6g, Saturated Fat: 3g, Polyunsaturated Fat: 1g, Monounsaturated Fat: 2g, Trans Fat: 1g, Cholesterol: 14mg, Sodium: 51mg, Potassium: 62mg, Fiber: 1g, Sugar: 7g, Vitamin A: 106IU, Calcium: 10mg, Iron: 1mg

This website provides approximate nutrition information for convenience and as a courtesy only. Nutrition data is gathered primarily from the USDA Food Composition Database, whenever available, or otherwise other online calculators.

© Author: Rachel Gurk
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  1. Rachael @ Set the Table says

    September 12, 2013 at 4:16 pm

    Yes! I love the ice cream answer. Hilarious. These posts are so fun to read. And I was with Nikki- I totally thought I was supposed to ask about his favorite blog/prop. Oh well- still great to read all the different answers and discover some new-to-me blogs!

    Reply
  2. ashley - Baker by Nature says

    September 12, 2013 at 2:24 pm

    You look so beautiful in your dress! And these cookies?! Wow. Gorgeous photos, too! xo

    Reply
    • Rachel Gurk says

      September 12, 2013 at 2:40 pm

      Thanks Ashley!

      Reply
  3. Javi Trulove @T3treats says

    September 12, 2013 at 1:53 pm

    My congratulations on you lovely wedding.. and the cookies looks adorable!!! love the classy chocolate chips cookies

    Reply
    • Rachel Gurk says

      September 12, 2013 at 2:40 pm

      Thank you!

      Reply
  4. tanya says

    September 12, 2013 at 1:31 pm

    Ha, eat the ice cream and then eat it all ! I love that! You two are adorable and you are both very lucky people to have found one another! I’m lucky to have found these cookies!

    Reply
    • Rachel Gurk says

      September 12, 2013 at 2:32 pm

      Thanks Tanya! :)

      Reply
  5. Taylor @ greens & chocolate says

    September 12, 2013 at 1:09 pm

    I wish my husband’s favorite cookies were made with whole wheat! These look delicious. His answer about you eating the ice cream before using it for a blog post is hilarious! Ohhh the life of a food blogger ;)

    Reply
    • Rachel Gurk says

      September 12, 2013 at 2:30 pm

      Haha, well he probably prefers them with white flour but he likes to eat healthier foods so he’s happy with these :)

      Reply
  6. Jamie | Thrifty Veggie Mama says

    September 12, 2013 at 12:56 pm

    Love, love that first cookie photo! I also love your wedding photo. Ice cream doesn’t last a long time around here either

    Reply
    • Rachel Gurk says

      September 12, 2013 at 2:29 pm

      Thanks Jamie!

      Reply
  7. Kristy @ Sweet Treats & More says

    September 12, 2013 at 12:44 pm

    These are so fun to read! Great wedding pic of you guys! And these cookies….LOVE!

    Reply
    • Rachel Gurk says

      September 12, 2013 at 2:28 pm

      Thanks Kristy!

      Reply
  8. Meaghan says

    September 12, 2013 at 12:31 pm

    “White stuff you got.” That is awesome!!

    Reply
    • Rachel Gurk says

      September 12, 2013 at 2:27 pm

      lol! At first I’m like…huh?

      Reply
  9. Lauren @ Climbing Grier Mountain says

    September 12, 2013 at 11:59 am

    BAHAHAHA! The ice cream comment is priceless! And the wedding photo of you too, gorgeous!

    Reply
    • Rachel Gurk says

      September 12, 2013 at 2:17 pm

      Thanks Lauren!

      Reply
  10. Sues says

    September 12, 2013 at 11:11 am

    What a sweet post! I’m loving reading these :)

    Reply
    • Rachel Gurk says

      September 12, 2013 at 2:12 pm

      Thanks Sues!

      Reply
  11. Kate@Diethood says

    September 12, 2013 at 11:06 am

    I can’t stop laughing about eating the ice cream! I have done that on a couple of occasions…the recipe has yet to make it to the blog.
    That photo is so awesome!! And your shoes ROCK!

    Reply
    • Rachel Gurk says

      September 12, 2013 at 2:10 pm

      Thank you! I left a comment further up regarding my whole wedding shoe situation. :)
      I still haven’t made the recipe with the ice cream either, lol!

      Reply
  12. Nikki @seeded at the table says

    September 12, 2013 at 11:06 am

    LOL! Am I the only one who thought I was supposed to ask what HIS favorite blog and prop is? oops!

    So, is it weird that I went to lifeandliberty.org? Nothing came up, unfortunately. haha

    And, how the heck did you take that first cookie photo? VERY cool!

    Tell your Ben that he and my Ben need to meet someday. Sounds like they’d get along well… :)

    Reply
    • Rachel Gurk says

      September 12, 2013 at 2:09 pm

      HOW is there not a lifeandliberty.org already? That’s nuts!

      Photo: Luck. ;) White back drop, white surface and then I added a little brightness. Or something. Luck.

      Reply
  13. Dorothy @ Crazy for Crust says

    September 12, 2013 at 10:34 am

    I love that photo at your wedding! How cool is it you wore flip flops?????

    These cookies are fabulous!

    Reply
    • Rachel Gurk says

      September 12, 2013 at 2:07 pm

      hahaha I’ll let you in on a secret…I got married BAREFOOT. I’m such a hippie (no, I’m not…not at all…farthest thing from it, actually). My dress was barely long enough and my husband is only a few inches taller than me so those things together led to no shoes. My mom was not happy about it! lol. No one could see. At least that’s what I told myself. Then I threw the flipflops on for leaving the church and during the reception. Crazy, right? 2 dollar flip-flops from Old Navy no less.

      Reply
  14. Erin @ Dinners, Dishes and Desserts says

    September 12, 2013 at 10:15 am

    Can’t wait to keep reading these – so many husbands had the same answers! Love that you eat ice cream before you make the recipe, sounds like something I would do.

    Reply
    • Rachel Gurk says

      September 12, 2013 at 10:18 am

      haha I can’t keep ice cream in the freezer for that very reason!

      Reply
  15. Julie @ Julie's Eats & Treats says

    September 12, 2013 at 10:03 am

    That dishwasher questions keeps cracking me up on everyone’s posts. It’s like the guys all of a sudden go oh no I prolly should be doing this…how do I justify it?! :)

    Reply
    • Rachel Gurk says

      September 12, 2013 at 10:18 am

      haha I know! Too funny! I clean up after dinner and get to watch him play with the kids and he says “thanks for dinner and for cleaning up,” every. single. time. That’s more than enough to keep this girl happy. :)

      Reply
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