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Whole Wheat Chocolate Chip Cookies with Oats

4.82
/5
25 mins
87 Comments
Jump to Recipe Video
By: Rachel GurkPosted: 08/26/2022Updated: 01/09/2023

This post may contain affiliate links. Please read my disclosure policy.

Cookies, text overlay reads "whole wheat chocolate chip cookies."
Cookies, text overlay reads "whole wheat chocolate chip cookies - so good."
Cookies, text overlay reads "whole wheat chocolate chip cookies."
Cookies, text overlay reads "whole wheat chocolate chip cookies."
Whole Wheat Chocolate Chip Cookies - a no-fail recipe | RachelCooks.com

A healthier spin on the original, whole wheat chocolate chip cookies are everything you want in a cookie: a little chewy, a little crispy and a lot decadent.

Recipe Overview

Why you’ll love it: For a chocolate chip cookie, these are pretty healthy with whole wheat flour and oats, and they taste great!

How long it takes: 15 minutes to make the dough, 10 minutes to bake each batch
Equipment you’ll need: electric mixer (optional), large bowl, cookie sheets
Servings: makes 5 dozen, depending on size

Layers of whole wheat chocolate chip cookies.
Table of Contents
open
  • 1 Recipe Overview
  • 2 About This Recipe
  • 3 What You’ll Need
  • 4 How To Make This Recipe
  • 5 FAQs
  • 6 Make It Your Own
  • 7 Make-Ahead Ideas
  • 8 Storage Tips
  • 9 Leftover Love
  • 10 More Cookie Recipes
  • 11 Get the Recipe: Whole Wheat Chocolate Chip Cookies with Oats

I’m always looking for guinea pigs to test my recipes on and my husband is a willing volunteer. I’m thankful for that; my kids aren’t quite as enthusiastic unless the recipe happens to contain sugar and chocolate. Ben is usually game for almost anything but does tend to like more classic recipes that don’t deviate too much from what he’s used to.

He loves the original crispy chocolate chip cookies and my chewy chocolate chocolate chip cookies (they’re my favorite!) but he is always open to trying something that is a little better for him. Making his favorites just a bit healthier usually gets his attention.

Don’t get me wrong, these cookies are still a treat!  They are chocolate chip cookies after all.  I try to focus on small changes, like making the cookies with whole wheat flour and oats, changes that can add up and make a difference in our health. Deprivation is not the answer, at least not for me.

I like to keep a big batch of this dough in the freezer. Ben will bake a couple in the toaster oven when he’s craving a chocolate chip cookie. Sometimes I even bake a small batch for him. Or for myself. Or sometimes we just eat the frozen dough.

About This Recipe

This is a basic chocolate chip cookie recipe but instead of regular all-purpose flour, you’ll be using whole wheat flour. The nutrition is amped up even more with a cup of oats.

Why make cookies with whole wheat flour and oats? Both are healthy whole grains that add fiber, protein, vitamins, and minerals to your diet. I often use at least half whole wheat flour to make cookies, if not all.

This dough does not need to be chilled before baking. If you want to chill it and bake the cookies later, that’s totally fine, too. We tested the cookies both ways and either way works.

Cookies on a white background.

I’ll get you started on the recipe here and give you some nice tips. As always, keep reading or hit the recipe button for the printable recipe near the end of the post. It has complete instructions, measurements, and nutrition information.

What You’ll Need

  • Whole Wheat Flour: Because whole wheat flour contains all the parts of the wheat kernel (bran, germ, and endosperm), it can spoil more quickly. It should be stored in the refrigerator or freezer. Wondering what you’ll do with the rest of the whole wheat flour? Try making whole wheat pancake mix or whole wheat banana bread. You’ll find lots more whole wheat recipes on my site.
  • Oats: Choose either quick oats or old-fashioned oats. I usually use quick oats for these cookies because they aren’t quite as noticeable as whole oats. Don’t use instant oatmeal or steel cut oats (Irish oats).
  • Chocolate Chips: You’ll need one 12 ounce bag of chips. I like to buy semisweet chocolate chips but milk chocolate chips are fine if you prefer them.
  • Butter: Unsalted butter is the best choice for baking. Take it out a couple of hours ahead of time so it has time to soften. Rock hard chilled butter will be impossible to blend in. Butter spreads are not a good choice for making cookies; they contain too much oil.
  • Brown Sugar and Granulated Sugar: These cookies call for a combination (50/50) of both kinds of sugar.
  • Eggs: A couple of eggs add extra flavor and nutrition.
  • Baking Soda, Salt: Common cookie ingredients that add leavening and seasoning.
  • Vanilla Extract: This baker’s friend enhances the flavor of the cookies with warm vanilla undertones.
Ingredients needed for recipe, including whole wheat flour and chocolate chips.

How To Make This Recipe

If you plan on baking the cookies right away, turn your oven on to preheat. Line a couple of cookie sheets with parchment paper (for easy clean-up).

You’ll need a large mixing bowl. Begin by creaming together the butter, sugar, brown sugar, and vanilla. You can use a hand mixer or a stand mixer, or you can do it with good ol’ arm power. The mixture should be creamy and well-blended.

Butter and sugar creamed together.

Blend in the eggs until they are completely incorporated.

Eggs blended into milk and sugar.

Measure out the flour by spooning it into a measuring cup and leveling it off with a straight edge, like a table knife. Avoid scooping the flour out of the container with the measuring cup or shaking it down to level it. This will result in too much flour being added to your cookies and they’ll be tough.

Add the flour, baking powder and salt to the bowl.

Dry ingredients being mixed.

Mix those three ingredients lightly right on top of the butter mixture until they are blended; then stir them in. Keep stirring the dough until there’s no dry flour but don’t overstir.

Dry ingredients being blended in.

Once the flour is blended into the butter/sugar mixture, fold in the the oats.

Oats added to cookie dough.

Next, fold in the the chocolate chips until they are evenly distributed.

Chocolate chips added.

Use a tablespoon or scoop to portion out the dough onto the cookie sheets. Leave a couple of inches between the cookies because they will spread a little.

Unbaked cookies on baking sheet.

Bake the cookies in the preheated oven for about ten minutes or until they are golden brown. They’ll be slightly soft in the middle. The longer you bake them, the crisper they’ll be.

Baked cookies on sheet pan with chocolate chips sprinkled around.

Cool the cookies a few minutes on the cookie sheet until they firm up a bit and then transfer them to a wire cooling rack to cool completely.

FAQs

Does whole wheat flour make cookies taste different?

You’ll maybe notice that your cookies are a bit denser and have more of a grainy, almost nutty flavor. Quite possibly, you won’t notice any difference at all; it’s very subtle. My family is used to whole wheat and it’s really not a big deal. So I say, why not slip in a bit of extra nutrition when you can? Even in a cookie!

Does whole wheat flour bake the same as all-purpose?

Usually, you can substitute whole wheat flour 1:1 for all-purpose flour in cookie recipes and the cookies will bake the same and taste very similar.
This doesn’t hold true for all baking though. Whole wheat pie crusts may be tougher; whole wheat breads are denser and heavier; and whole wheat cakes will be heavy and not rise as much.
Try these recipes that use whole wheat flour: whole wheat banana muffins with streusel; whole wheat zucchini bread; whole wheat cornbread; or whole wheat biscuits.

Can you substitute all-purpose flour for whole wheat flour?

If your recipe calls for whole wheat flour, it’s usually okay to substitute all-purpose flour. That holds true for this chocolate chip cookie recipe and most other recipes. The cookies won’t be exactly the same but will taste great either way.

Make It Your Own

  • Not a fan of whole wheat flour? Feel free to use all-purpose flour instead!
  • There are some good gluten-free flours that can be substituted 1:1 for wheat flour. Note: I haven’t tested this recipe with gluten-free flour.
  • Feeling nutty? Substitute a cup of chopped nuts for the oats.
  • There are lots of baking chips to choose from: peanut butter, toffee, milk chocolate, butterscotch, etc. Mix things up a little by using a different flavor.
  • Rather have M&Ms? Try my popular M&M cookies!
  • Prefer iced cookies? Try my recipe for iced oatmeal cookies.
Two cookies stacked, one with a bite removed.

Make-Ahead Ideas

The cookie dough can be made ahead and either refrigerated or frozen. The dough will keep in the refrigerator for two to four days, or in the freezer for up to two months.

I like to freeze the dough in convenient cookie sized amounts. Freeze individual dough balls for an hour or so on a tray until they firm up; then place them in a freezer safe container. You can take out as many as you like whenever you’re craving fresh warm cookies.

Storage Tips

Baked cookies, once they are thoroughly cooled, can be stored in an airtight container on the counter for up to a week. They freeze well too, and will keep for a few months.

Leftover Love

Is there such a thing as leftover cookies? I don’t think so! If you seem to have an excess of cookies and you don’t want to freeze them, make a chocolate chip cookie milkshake or simply crumble a cookie on a bowl of ice cream for a special treat.

More Cookie Recipes

Coconut Oatmeal Cookies – perfectly crispy!

Easy Trail Mix Cookies

Oatmeal Raisin Cookies (whole wheat!)

Snickerdoodle Recipe

Browse All

Did you make this? Be sure to leave a review below and tag me @rachelcooksblog on Facebook, Instagram, or Pinterest!

Two whole wheat chocolate chip cookies, one with a bite out of it.
Recipe

Get the Recipe: Whole Wheat Chocolate Chip Cookies with Oats

4.82 from 11 votes
Prep Time: 15 mins
Cook Time: 10 mins
Total Time: 25 mins
60 cookies
Print Rate Recipe
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A healthier spin on the original, whole wheat chocolate chip cookies are everything you want in a cookie: a little chewy, a little crispy and a lot decadent.

Ingredients

  • 2 ¼ cups whole wheat flour (see note)
  • 1 teaspoon baking soda
  • ¾ teaspoon salt
  • 1 cup (2 sticks) unsalted butter, softened
  • ¾ cup granulated sugar
  • ¾ cup packed brown sugar
  • 1 teaspoon pure vanilla extract
  • 2 eggs
  • 1 cup quick cooking oats
  • 2 cups semisweet chocolate chips (12 oz. bag)

Instructions

  • Preheat oven to 365°F. Line cookie sheets with parchment paper.
  • In the bowl of a mixer (or you can mix it by hand), cream together butter, granulated sugar, brown sugar, and vanilla extract. Once creamy and fluffy, beat in eggs.
  • Add flour, baking soda and salt to bowl. Stir just enough to mix the dry ingredients, then mix into the butter mixture until just combined. Stir in oats, then chocolate chips.
  • Scoop onto cookie sheet (1 ½ tablespoons each), leaving some space between each cookie.
  • Bake for 10-11 minutes or until golden brown but still slightly soft in the middle. Cool on cookie sheet for five minutes, then transfer to a wire rack to cool completely.

Notes

  • If you prefer, substitute all-purpose flour, or use a combination of whole wheat flour and all-purpose flour.
  • A cup of chopped nuts can be substituted for the oats.
  • Dough can be refrigerated for two to four days or frozen up to two months to bake later. See Make-Ahead Ideas (above) for tips on freezing dough.

Nutrition Information

Serving: 1cookie, Calories: 104kcal, Carbohydrates: 13g, Protein: 1g, Fat: 6g, Saturated Fat: 3g, Polyunsaturated Fat: 1g, Monounsaturated Fat: 2g, Trans Fat: 1g, Cholesterol: 14mg, Sodium: 51mg, Potassium: 62mg, Fiber: 1g, Sugar: 7g, Vitamin A: 106IU, Calcium: 10mg, Iron: 1mg

This website provides approximate nutrition information for convenience and as a courtesy only. Nutrition data is gathered primarily from the USDA Food Composition Database, whenever available, or otherwise other online calculators.

© Author: Rachel Gurk
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  1. Emily Blakely says

    March 14, 2023 at 8:57 pm

    5 stars
    Made these today with a couple subs (just baking powder instead of soda, as I was out, and I used 50/50 all purpose and whole wheat. I loved them and my 2 girls (7 and 20) both loved them too! These will define be made again!

    Reply
    • Rachel Gurk says

      March 15, 2023 at 9:54 am

      So glad to hear it! Thanks for leaving a review!

      Reply
  2. Yumvilla says

    October 21, 2017 at 4:38 am

    Love the classy chocolate chips cookies! tanks so much!

    Reply
    • Rachel Gurk says

      October 21, 2017 at 8:22 am

      So glad you liked them!

      Reply
  3. Hal says

    November 1, 2013 at 2:59 pm

    I made these yesterday and they turned out tremendous! Thanks for the recipe

    Reply
    • Rachel Gurk says

      November 1, 2013 at 8:24 pm

      So glad you liked them, Hal!

      Reply
      • Hal says

        November 1, 2013 at 8:31 pm

        http://instagram.com/p/gMJ-4PlVql/

        There’s the pic, if you can see it! Ignore the comments lol.

        Reply
  4. bea says

    September 22, 2013 at 11:42 pm

    I just made these and they’re SO awesome. thank you!

    Reply
    • Rachel Gurk says

      September 23, 2013 at 7:51 am

      So glad you liked them!

      Reply
  5. Kimberly @ The Daring Gourmet says

    September 17, 2013 at 11:59 pm

    Those cookies look soooooo good!! It’s 9pm and I’m already battling a sweet craving – your pictures are sheer torture!! So did you ever figure out what your hubby meant by “white stuff”? :)

    Reply
    • Rachel Gurk says

      September 18, 2013 at 8:28 am

      I think he was talking about my white marble board, but I have a lot of white stuff — lol! White dishes are my favorite.

      Reply
  6. vanillasugarblog says

    September 16, 2013 at 7:45 pm

    I wish I had all kinds of props.
    HA! I have is parchment paper!
    LOL
    I haven’t made a whole wheat cc cookie yet.
    In all the years of blogging…crazy!

    Reply
    • Rachel Gurk says

      September 16, 2013 at 9:07 pm

      That is crazy! Get on it! ;)

      Reply
  7. Stephanie @ Eat. Drink. Love. says

    September 13, 2013 at 11:40 pm

    This is such a cute post! My husband is the same way about props and such!

    Reply
  8. Sommer @ ASpicyPerspective says

    September 13, 2013 at 8:02 pm

    What a sweet post – gotta love our great guys! Awesome cookie recipe, too! Can never pass up a good Chocolate Chip Cookie. :)

    Reply
  9. Georgia @ The Comfort of Cooking says

    September 13, 2013 at 4:16 pm

    Aww, I love this! What a sweet post dedicated to your other half. Love these cookies, too!

    Reply
  10. Kayle (The Cooking Actress) says

    September 13, 2013 at 10:32 am

    ahahahaa! Aw! I love all these questions! So cute! And your hubs has good taste (well I mean obv. he chose you :P)-these cookies look AWESOME!

    Reply
    • Rachel Gurk says

      September 13, 2013 at 2:23 pm

      aww, you’re so sweet Kayle! Thank you!

      Reply
  11. denise says

    September 13, 2013 at 6:24 am

    those cookies sound really good–and you didn’t make the flour half all-purpose like some whole wheat recipes do

    Reply
    • Rachel Gurk says

      September 13, 2013 at 2:22 pm

      Thanks Denise! I do that sometimes but then I wouldn’t label them “whole wheat” as that would be very misleading. :) I love the chewiness that the whole wheat flour adds.

      Reply
      • denise says

        September 13, 2013 at 11:41 pm

        I’ll have to try it–I love my cookies a bit chewy

        Reply
  12. Aggie says

    September 13, 2013 at 6:23 am

    aww, loving these hubby posts! and the pictures of you guys, so sweet! The cookies look perfect!

    Reply
    • Rachel Gurk says

      September 13, 2013 at 2:18 pm

      Thanks friend!

      Reply
  13. Diane {Created by Diane} says

    September 13, 2013 at 2:30 am

    Oh I NEED to make these cookies, they are better for me…so I can have more, right?
    Loved getting to know your hubby, and I love that you ate the ice cream!!!

    Reply
    • Rachel Gurk says

      September 13, 2013 at 2:18 pm

      Absolutely! You can have a whole bunch…on top of ice cream! :)

      Reply
  14. Cassie | Bake Your Day says

    September 12, 2013 at 7:21 pm

    I can picture the conversation happening in my mind…the back and forth is pretty much how ours went down too. I love this!

    Reply
    • Rachel Gurk says

      September 13, 2013 at 2:16 pm

      Thanks Cassie! :)

      Reply
  15. Angelyn @ Everyday Desserts says

    September 12, 2013 at 4:36 pm

    I usually don’t do “healthy” desserts, but these look so perfect!

    Reply
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